claude-scientific-skills

Skills (149)

• iso-13485-certification

  MIT license678 lines3123 words1 blocks

  Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with...

  bash
• tiledbvcf

  MIT license454 lines1804 words19 blocks

  Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, par...

  bashpython
• research-grants

  MIT license929 lines4843 words1 blocks

  Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broad...

  bash
• scientific-brainstorming

  MIT license189 lines1129 words

  Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumption...

• etetoolkit

  GPL-3.0 license621 lines2064 words26 blocks

  Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/S...

  bashpython
• experimental-design

  MIT license233 lines1681 words4 blocks

  Design experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out treatment combinations so the resul...

  bashpython
• rdkit

  BSD-3-Clause license833 lines2635 words41 blocks

  Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D...

  bashpython
• clinical-reports

  MIT License1132 lines5399 words1 blocks

  Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (I...

  bash
• primekg

  Unknown97 lines467 words3 blocks

  Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, diseases, phenotypes, and more.

  python
• dhdna-profiler

  MIT license162 lines1256 words1 blocks

  Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how someone thinks, understand cogni...

• citation-management

  MIT License1251 lines5155 words35 blocks

  Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, a...

  bashbibtexjson
• simpy

  MIT license427 lines1457 words14 blocks

  Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, an...

  python
• matplotlib

  https://github.com/matplotlib/matplotlib/tree/main/LICENSE380 lines1484 words22 blocks

  Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integ...

  bashpython
• omero-integration

  Unknown250 lines1081 words4 blocks

  Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-...

  bashpython
• bulk-rnaseq

  MIT197 lines1864 words5 blocks

  End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, ...

  bashmermaid
• nextflow

  Apache-2.0194 lines1576 words5 blocks

  Build, run, and debug Nextflow data pipelines and nf-core workflows end to end. Use whenever the user mentions Nextflow, nf-core, .nf files, nextflow....

  bashnextflow
• pydeseq2

  MIT license577 lines1971 words24 blocks

  Differential gene expression analysis for bulk RNA-seq with PyDESeq2, including formulaic designs, Wald tests, FDR correction, LFC shrinkage, and resu...

  bashpython
• onekgpd

  MIT369 lines2395 words4 blocks

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  bash
• optimize-for-gpu

  708 lines4765 words15 blocks

  "GPU-accelerate Python code using CuPy, Numba CUDA, Warp, cuDF, cuML, cuGraph, KvikIO, cuCIM, cuxfilter, cuVS, cuSpatial, and RAFT. Use whenever the u...

  bashpython
• astropy

  BSD-3-Clause license352 lines1811 words6 blocks

  Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time s...

  bashpython